| abstract_id |
An abstract identifier |
| additional_information |
Additional information related to this object |
| affiliations |
The affiliations of a contributor |
| age |
The age of a subject at the "reference" timepoint (= when subject was include... |
| age_unit |
The unit of the age value (e |
| airr_runs |
References to AIRR-seq runs associated with a sample |
| allele |
The HLA allele (field 1 in the HLA nomenclature) |
| analyte_name |
Name the antigen that was stained for |
| ancestry |
Broad geographic origin of ancestry (continent) |
| antibody_registry |
A reference to an entry in an antibody registry |
| atcc_key |
The American Type Culture Collection (ATCC) product number |
| background_strain |
The background strain of the animal |
| bandpass |
The wavelength range transmitted by the detector’s bandpass filter, expressed... |
| batch_normalization_method |
Which batch normalization method was used? If none was used, please write: n... |
| breed |
To come |
| checksum_algorithm |
The algorithm used to calculate the file checksum |
| clone |
The clone of the antibody |
| collection_relative_time_point_event_label |
The baseline event relative to which the time point is measured |
| collection_relative_time_point_unit |
The unit of the collection time point relative to the baseline event |
| collection_relative_time_point_value |
The numeric value of the collection time point relative to the baseline event |
| comorbidities |
The comorbidities of a human subject |
| compensation_method |
Which compensation methods were used? If none were used, please write: no me... |
| complete_sequences |
To be considered complete, the procedure used for library construction MUST... |
| compression |
The type of compression (if any) used for the file (e |
| conjugate |
The conjugate (e |
| contributors |
Contributors to the creation of the data set |
| data_access_level |
The data access level for the study |
| data_processing |
The data processing steps used in a cytometry experiment |
| data_transformation_method |
Which data transformation methods were used? If none were used, please write... |
| debarcoding_method |
Which debarcoding method was used? If none was used, please write: no method... |
| department |
The department the contributor belongs to |
| description |
A thorough description of the project including study design, disease, and ou... |
| detector_name |
The name or identifier of the detector used to capture emitted light from the... |
| dilution |
The dilution used for the antibody |
| disease_or_healthy |
Indicate if subject had a disease or if healthy |
| disease_states |
The current state of the diseases of the subject at the time of sampling |
| diseases |
Relevant diseases at the time of sampling |
| email |
The email address of the contributor |
| ethnicity |
The cultural or geographical group the subject belongs to |
| expression_level |
Changes to HLA expression levels (suffix field in the HLA nomenclature) |
| file_checksum |
The checksum for the file |
| file_id |
The unique identifier for the deposited data file |
| file_name |
The name of the files with the data for the given sample |
| file_uuid |
The UUID of the file object on the storage |
| fixation |
Was a fixation step included before the acquisition? If so, please specify t... |
| forward_pcr_primer_target_location |
Position of the most distal nucleotide templated by the forward primer or pri... |
| gating_description |
The gating strategy or a reference to where it is described in detail (e |
| gene |
The HLA gene/locus as defined in the MHC Restriction Ontology |
| grants |
Grants supporting the study |
| hlas |
The HLA object |
| instrument_information |
The information of the instrument used in a cytometry experiment |
| key |
Identifier/code for the referenced concept |
| keywords |
Keywords fitting the study |
| library_generation_kit_version |
When using a library generation protocol from a commercial provider, provide ... |
| library_generation_method |
Generic type of library generation |
| library_generation_protocol |
Description of processes applied to substrate to obtain a library that is rea... |
| manufacturer |
The manufacturer of the antibody or instrument |
| medications |
Medications given to the subject |
| model |
Instrument model shall be titled |
| modifications |
To come |
| name |
A name - redefined where used |
| noncoding_variant |
Nucleotide polymorphism outside of the gene's coding region (field 4 in the H... |
| normalization_method |
Which other normalization methods, besides the compensation methods and batch... |
| nucleic_acid_processing |
Procedures used to prepare nucleic acid libraries for sequencing |
| number_of_lasers |
The number of lasers in the flow cytometer |
| optical_configurations |
The set of optical configurations used by the instrument, including informat... |
| orcid |
The ORCID identifier for the contributor |
| organization |
The organization the contributor is affiliated with |
| pcr_target_locus |
Designation of the target locus |
| pcr_targets |
The IG/TR locus or loci under investigation |
| physical_linkage |
In case an experimental setup is used that physically links nucleic acids der... |
| power |
The output power of the laser expressed in milliwatts (mW) |
| primary_antibody |
The primary antibody used in the staining panel |
| protein |
The HLA protein (field 2 in the HLA nomenclature) |
| publication_curie |
The PMID or DOI of the publication |
| publications |
List of publications |
| randomization_method |
Which randomization methods were used? If none were used, please write: no m... |
| reverse_pcr_primer_target_location |
Position of the most proximal nucleotide templated by the reverse primer or p... |
| role |
The role of the contributor in the study |
| sample_collection_method |
The method used to collect the sample (e |
| sample_event_entries |
A collection of individual sample events |
| sample_event_id |
A sample ID to associate the subjects with a sample event |
| sample_events |
Reference to the SampleEventCollection |
| sample_id |
The user defined sample ID used to associate samples with the sample event |
| samples |
Reference to the study samples |
| secondary_antibody |
The secondary antibody used in the staining panel, if applicable |
| sequencing_batch_number |
ID of sequencing run assigned by the sequencing facility |
| sequencing_facility |
Name and address of sequencing facility |
| sequencing_kit |
Name, manufacturer, order and lot numbers of sequencing kit |
| sequencing_platform |
Designation of sequencing instrument used |
| sequencing_run |
Metadata about the sequencing experiment |
| sequencing_run_date |
Date of sequencing run in the format year-month-day |
| sex |
The biological sex of the subject |
| species |
The species of the subject |
| staining_panels |
The methods and reagents used in a cytometry panel |
| study |
Reference to a research study or experiment containing metadata, methodology,... |
| study_id |
The internal identifier of the study |
| study_type |
Type of the study |
| subject_id |
The user defined subject ID used to associate subject with samples |
| subject_type |
Is the subject human, rodent, animal or a cell culture subject |
| subjects |
Reference to the study subjects |
| synonymous_variant |
The synonymous mutation within the HLA coding region (field 3 in the HLA nome... |
| template_amount_unit |
The unit of the template amount that went into the process |
| template_amount_value |
Amount of template that went into the process |
| template_class |
The class of nucleic acid that was used as primary starting material for the ... |
| template_quality |
Description and results of the quality control performed on the template mate... |
| term |
The human-readable term or label |
| tissue |
The tissue from which the sample was taken |
| title |
The full title of the study |
| title_short |
A short title of the study |
| total_reads_passing_qc_filter |
Number of usable reads for analysis |
| unmixing_method |
Which unmixing method was used? If none was used, please write: no method wa... |
| wavelength |
The wavelength of the laser in nanometers and its associated spectral region ... |