Class: Cell Culture (CellCultureSubject)

Cell line subject of a study.

URI: nfdi4immuno:CellCultureSubject

 classDiagram
    class CellCultureSubject
    click CellCultureSubject href "../CellCultureSubject/"
      AbstractSubject <|-- CellCultureSubject
        click AbstractSubject href "../AbstractSubject/"

      CellCultureSubject : additional_information

      CellCultureSubject : atcc_key

      CellCultureSubject : name

      CellCultureSubject : sex





        CellCultureSubject --> "0..1 _recommended_" BiologicalSex : sex
        click BiologicalSex href "../BiologicalSex/"



      CellCultureSubject : species





        CellCultureSubject --> "1" Species : species
        click Species href "../Species/"



      CellCultureSubject : study_id

      CellCultureSubject : subject_id

      CellCultureSubject : subject_type





        CellCultureSubject --> "1" SubjectType : subject_type
        click SubjectType href "../SubjectType/"



      CellCultureSubject : tissue





        CellCultureSubject --> "0..1" Tissue : tissue
        click Tissue href "../Tissue/"

Inheritance

• AbstractSubject
  • CellCultureSubject

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 String	The name or identifier of the cell culture line	direct
atcc_key	0..1 Uriorcurie	The American Type Culture Collection (ATCC) product number	direct
tissue	0..1 Tissue	The tissue from which the sample was taken	direct
subject_id	1 String	The user defined subject ID used to associate subject with samples	AbstractSubject
study_id	1 String	The internal identifier of the study	AbstractSubject
subject_type	1 SubjectType	Is the subject human, rodent, animal or a cell culture subject	AbstractSubject
species	1 Species	The species of the subject	AbstractSubject
sex	0..1 recommended BiologicalSex	The biological sex of the subject	AbstractSubject
additional_information	0..1 String	Additional information related to this object	AbstractSubject

Identifier and Mapping Information

Schema Source

• from schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema

Mappings

Mapping Type	Mapped Value
self	nfdi4immuno:CellCultureSubject
native	nfdi4immuno:CellCultureSubject

LinkML Source

Direct

name: CellCultureSubject
description: Cell line subject of a study.
title: Cell Culture
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
is_a: AbstractSubject
slots:
- name
- atcc_key
- tissue
slot_usage:
  name:
    name: name
    description: The name or identifier of the cell culture line.
    title: Cell Line Name
    examples:
    - value: HeLa
    - value: HEK293T
    required: true
  tissue:
    name: tissue
    required: false

Induced

name: CellCultureSubject
description: Cell line subject of a study.
title: Cell Culture
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
is_a: AbstractSubject
slot_usage:
  name:
    name: name
    description: The name or identifier of the cell culture line.
    title: Cell Line Name
    examples:
    - value: HeLa
    - value: HEK293T
    required: true
  tissue:
    name: tissue
    required: false
attributes:
  name:
    name: name
    description: The name or identifier of the cell culture line.
    title: Cell Line Name
    examples:
    - value: HeLa
    - value: HEK293T
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: name
    owner: CellCultureSubject
    domain_of:
    - Antibody
    - Contributor
    - CellCultureSubject
    range: string
    required: true
  atcc_key:
    name: atcc_key
    description: The American Type Culture Collection (ATCC) product number.
    title: ATCC key
    examples:
    - value: atcc:11303
      description: Escherichia coli strain B.
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: atcc_key
    owner: CellCultureSubject
    domain_of:
    - CellCultureSubject
    range: uriorcurie
    pattern: ^atcc:([a-zA-Z]+-)?\d+(\.\d)?$
  tissue:
    name: tissue
    description: The tissue from which the sample was taken.
    title: Tissue
    examples:
    - value: '{"key": "UBERON:0003920", "term": "Venous blood vessel"}'
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: tissue
    owner: CellCultureSubject
    domain_of:
    - Sample
    - CellCultureSubject
    range: Tissue
    required: false
    pattern: ^.+$
  subject_id:
    name: subject_id
    description: 'The user defined subject ID used to associate subject with samples.
      Must be unique within the study.

      '
    title: Subject ID
    examples:
    - value: MH031
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    is_a: abstract_id
    identifier: true
    alias: subject_id
    owner: CellCultureSubject
    domain_of:
    - Sample
    - AbstractSubject
    range: string
    required: true
    pattern: ^.+$
  study_id:
    name: study_id
    description: The internal identifier of the study. Must be unique.
    title: Study ID
    examples:
    - value: MS Study 01 UMKS
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    is_a: abstract_id
    identifier: true
    alias: study_id
    owner: CellCultureSubject
    domain_of:
    - Study
    - AbstractSubject
    range: string
    required: true
    pattern: ^.+$
  subject_type:
    name: subject_type
    description: Is the subject human, rodent, animal or a cell culture subject.
    title: Subject Type
    examples:
    - value: human, rodent, other_animal, cell_culture
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: subject_type
    owner: CellCultureSubject
    domain_of:
    - AbstractSubject
    range: SubjectType
    required: true
    pattern: .+
  species:
    name: species
    description: The species of the subject.
    title: Species
    examples:
    - value: '{''key'': ''NCBITaxon:9606'', ''term'': ''Homo sapiens''}'
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: species
    owner: CellCultureSubject
    domain_of:
    - AbstractSubject
    range: Species
    required: true
    pattern: .+
  sex:
    name: sex
    description: The biological sex of the subject.
    title: Sex
    examples:
    - value: Female
      description: Female biological sex.
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: sex
    owner: CellCultureSubject
    domain_of:
    - AbstractSubject
    range: BiologicalSex
    recommended: true
  additional_information:
    name: additional_information
    annotations:
      preferred_format:
        tag: preferred_format
        value: json
    description: 'Additional information related to this object. Can be in any format,
      but JSON key-value pairs are preferred.

      '
    title: Additional information
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: additional_information
    owner: CellCultureSubject
    domain_of:
    - SampleEvent
    - Sample
    - Study
    - AbstractSubject
    range: string