Class: Non-Human (NonHumanSubject)

A non-human animal subject in a study.

URI: nfdi4immuno:NonHumanSubject

 classDiagram
    class NonHumanSubject
    click NonHumanSubject href "../NonHumanSubject/"
      AbstractSubject <|-- NonHumanSubject
        click AbstractSubject href "../AbstractSubject/"

      NonHumanSubject : additional_information

      NonHumanSubject : age

      NonHumanSubject : age_unit





        NonHumanSubject --> "0..1" TimeUnits : age_unit
        click TimeUnits href "../TimeUnits/"



      NonHumanSubject : background_strain

      NonHumanSubject : breed

      NonHumanSubject : modifications

      NonHumanSubject : sex





        NonHumanSubject --> "0..1 _recommended_" BiologicalSex : sex
        click BiologicalSex href "../BiologicalSex/"



      NonHumanSubject : species





        NonHumanSubject --> "1" Species : species
        click Species href "../Species/"



      NonHumanSubject : study_id

      NonHumanSubject : subject_id

      NonHumanSubject : subject_type





        NonHumanSubject --> "1" SubjectType : subject_type
        click SubjectType href "../SubjectType/"

Inheritance

• AbstractSubject
  • NonHumanSubject

Slots

Name	Cardinality and Range	Description	Inheritance
age	0..1 recommended Double	The age of a subject at the "reference" timepoint (= when subject was include...	direct
age_unit	0..1 TimeUnits	The unit of the age value (e	direct
background_strain	1 String	The background strain of the animal	direct
breed	0..1 String	To come	direct
modifications	0..1 String	To come	direct
subject_id	1 String	The user defined subject ID used to associate subject with samples	AbstractSubject
study_id	1 String	The internal identifier of the study	AbstractSubject
subject_type	1 SubjectType	Is the subject human, rodent, animal or a cell culture subject	AbstractSubject
species	1 Species	The species of the subject	AbstractSubject
sex	0..1 recommended BiologicalSex	The biological sex of the subject	AbstractSubject
additional_information	0..1 String	Additional information related to this object	AbstractSubject

Identifier and Mapping Information

Schema Source

• from schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema

Mappings

Mapping Type	Mapped Value
self	nfdi4immuno:NonHumanSubject
native	nfdi4immuno:NonHumanSubject

LinkML Source

Direct

name: NonHumanSubject
description: A non-human animal subject in a study.
title: Non-Human
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
is_a: AbstractSubject
slots:
- age
- age_unit
- background_strain
- breed
- modifications

Induced

name: NonHumanSubject
description: A non-human animal subject in a study.
title: Non-Human
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
is_a: AbstractSubject
attributes:
  age:
    name: age
    description: The age of a subject at the "reference" timepoint (= when subject
      was included in the study).
    title: Age
    examples:
    - value: '23.5'
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: age
    owner: NonHumanSubject
    domain_of:
    - HumanSubject
    - NonHumanSubject
    range: double
    recommended: true
  age_unit:
    name: age_unit
    description: The unit of the age value (e.g. year, day).
    title: Age unit
    examples:
    - value: day
      description: A period of 24 hours.
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: age_unit
    owner: NonHumanSubject
    domain_of:
    - HumanSubject
    - NonHumanSubject
    range: TimeUnits
  background_strain:
    name: background_strain
    description: The background strain of the animal.
    title: Background strain
    examples:
    - value: C57BL/6
      description: Black 6 mouse, is a common inbred strain.
    - value: Wistar rat
      description: An outbred strain of laboratory rats characterized by their long
        ears.
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: background_strain
    owner: NonHumanSubject
    domain_of:
    - NonHumanSubject
    range: string
    required: true
    pattern: .+
  breed:
    name: breed
    description: To come.
    title: Breed
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: breed
    owner: NonHumanSubject
    domain_of:
    - NonHumanSubject
    range: string
  modifications:
    name: modifications
    description: To come.
    title: Modifications
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: modifications
    owner: NonHumanSubject
    domain_of:
    - NonHumanSubject
    range: string
  subject_id:
    name: subject_id
    description: 'The user defined subject ID used to associate subject with samples.
      Must be unique within the study.

      '
    title: Subject ID
    examples:
    - value: MH031
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    is_a: abstract_id
    identifier: true
    alias: subject_id
    owner: NonHumanSubject
    domain_of:
    - Sample
    - AbstractSubject
    range: string
    required: true
    pattern: ^.+$
  study_id:
    name: study_id
    description: The internal identifier of the study. Must be unique.
    title: Study ID
    examples:
    - value: MS Study 01 UMKS
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    is_a: abstract_id
    identifier: true
    alias: study_id
    owner: NonHumanSubject
    domain_of:
    - Study
    - AbstractSubject
    range: string
    required: true
    pattern: ^.+$
  subject_type:
    name: subject_type
    description: Is the subject human, rodent, animal or a cell culture subject.
    title: Subject Type
    examples:
    - value: human, rodent, other_animal, cell_culture
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: subject_type
    owner: NonHumanSubject
    domain_of:
    - AbstractSubject
    range: SubjectType
    required: true
    pattern: .+
  species:
    name: species
    description: The species of the subject.
    title: Species
    examples:
    - value: '{''key'': ''NCBITaxon:9606'', ''term'': ''Homo sapiens''}'
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: species
    owner: NonHumanSubject
    domain_of:
    - AbstractSubject
    range: Species
    required: true
    pattern: .+
  sex:
    name: sex
    description: The biological sex of the subject.
    title: Sex
    examples:
    - value: Female
      description: Female biological sex.
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: sex
    owner: NonHumanSubject
    domain_of:
    - AbstractSubject
    range: BiologicalSex
    recommended: true
  additional_information:
    name: additional_information
    annotations:
      preferred_format:
        tag: preferred_format
        value: json
    description: 'Additional information related to this object. Can be in any format,
      but JSON key-value pairs are preferred.

      '
    title: Additional information
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: additional_information
    owner: NonHumanSubject
    domain_of:
    - SampleEvent
    - Sample
    - Study
    - AbstractSubject
    range: string