Class: PCR Target (PCRTarget)

A target locus and primer locations used in PCR amplification of immunoglobulin or T cell receptor genes.

 classDiagram
    class PCRTarget
    click PCRTarget href "../PCRTarget/"
      PCRTarget : forward_pcr_primer_target_location

      PCRTarget : pcr_target_locus





        PCRTarget --> "1" PCRTargetLoci : pcr_target_locus
        click PCRTargetLoci href "../PCRTargetLoci/"



      PCRTarget : reverse_pcr_primer_target_location

Slots

Name	Cardinality and Range	Description	Inheritance
pcr_target_locus	1 PCRTargetLoci	Designation of the target locus	direct
forward_pcr_primer_target_location	0..1 recommended String	Position of the most distal nucleotide templated by the forward primer or pri...	direct
reverse_pcr_primer_target_location	0..1 recommended String	Position of the most proximal nucleotide templated by the reverse primer or p...	direct

Usages

used by	used in	type	used
NucleicAcidProcessing	pcr_targets	range	PCRTarget

Identifier and Mapping Information

Schema Source

from schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema

Mappings

Mapping Type	Mapped Value
self	nfdi4immuno:PCRTarget
native	nfdi4immuno:PCRTarget

LinkML Source

Direct

name: PCRTarget
description: A target locus and primer locations used in PCR amplification of immunoglobulin
  or T cell receptor genes.
title: PCR Target
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
slots:
- pcr_target_locus
- forward_pcr_primer_target_location
- reverse_pcr_primer_target_location

Induced

name: PCRTarget
description: A target locus and primer locations used in PCR amplification of immunoglobulin
  or T cell receptor genes.
title: PCR Target
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
attributes:
  pcr_target_locus:
    name: pcr_target_locus
    description: 'Designation of the target locus. Note that this field uses a controlled
      vocabulary that is meant to provide a generic classification of the locus, not
      necessarily the correct designation according to a specific nomenclature.

      '
    title: Target locus for PCR
    examples:
    - value: igk
      description: Immunoglobulin kappa light chain locus.
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: pcr_target_locus
    owner: PCRTarget
    domain_of:
    - PCRTarget
    range: PCRTargetLoci
    required: true
    pattern: ^.+$
  forward_pcr_primer_target_location:
    name: forward_pcr_primer_target_location
    description: 'Position of the most distal nucleotide templated by the forward
      primer or primer mix.

      '
    title: Forward PCR primer target location
    examples:
    - value: IGHV, +23
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: forward_pcr_primer_target_location
    owner: PCRTarget
    domain_of:
    - PCRTarget
    range: string
    recommended: true
  reverse_pcr_primer_target_location:
    name: reverse_pcr_primer_target_location
    description: 'Position of the most proximal nucleotide templated by the reverse
      primer or primer mix.

      '
    title: Reverse PCR primer target location
    examples:
    - value: IGHG, +57
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: reverse_pcr_primer_target_location
    owner: PCRTarget
    domain_of:
    - PCRTarget
    range: string
    recommended: true