Class: Staining Panel (StainingPanel)

The methods and reagents used in a cytometry panel.

 classDiagram
    class StainingPanel
    click StainingPanel href "../StainingPanel/"
      StainingPanel : analyte_name

      StainingPanel : data_processing





        StainingPanel --> "0..1 _recommended_" CytometryDataProcessing : data_processing
        click CytometryDataProcessing href "../CytometryDataProcessing/"



      StainingPanel : fixation

      StainingPanel : instrument_information





        StainingPanel --> "0..1 _recommended_" InstrumentInformation : instrument_information
        click InstrumentInformation href "../InstrumentInformation/"



      StainingPanel : primary_antibody





        StainingPanel --> "1" Antibody : primary_antibody
        click Antibody href "../Antibody/"



      StainingPanel : secondary_antibody





        StainingPanel --> "0..1" Antibody : secondary_antibody
        click Antibody href "../Antibody/"

Slots

Name	Cardinality and Range	Description	Inheritance
analyte_name	1 String	Name the antigen that was stained for	direct
primary_antibody	1 Antibody	The primary antibody used in the staining panel	direct
secondary_antibody	0..1 Antibody	The secondary antibody used in the staining panel, if applicable	direct
fixation	0..1 String	Was a fixation step included before the acquisition? If so, please specify t...	direct
instrument_information	0..1 recommended InstrumentInformation	The information of the instrument used in a cytometry experiment	direct
data_processing	0..1 recommended CytometryDataProcessing	The data processing steps used in a cytometry experiment	direct

Usages

used by	used in	type	used
CytometryExperiment	staining_panels	range	StainingPanel

Identifier and Mapping Information

Schema Source

from schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema

Mappings

Mapping Type	Mapped Value
self	nfdi4immuno:StainingPanel
native	nfdi4immuno:StainingPanel

LinkML Source

Direct

name: StainingPanel
description: The methods and reagents used in a cytometry panel.
title: Staining Panel
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
slots:
- analyte_name
- primary_antibody
- secondary_antibody
- fixation
- instrument_information
- data_processing

Induced

name: StainingPanel
description: The methods and reagents used in a cytometry panel.
title: Staining Panel
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
attributes:
  analyte_name:
    name: analyte_name
    description: Name the antigen that was stained for.
    title: Analyte
    examples:
    - value: CD4
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: analyte_name
    owner: StainingPanel
    domain_of:
    - StainingPanel
    range: string
    required: true
    pattern: ^.+$
  primary_antibody:
    name: primary_antibody
    description: The primary antibody used in the staining panel.
    title: Primary antibody
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: primary_antibody
    owner: StainingPanel
    domain_of:
    - StainingPanel
    range: Antibody
    required: true
    pattern: ^.+$
  secondary_antibody:
    name: secondary_antibody
    description: The secondary antibody used in the staining panel, if applicable.
    title: Secondary antibody
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: secondary_antibody
    owner: StainingPanel
    domain_of:
    - StainingPanel
    range: Antibody
  fixation:
    name: fixation
    description: 'Was a fixation step included before the acquisition? If so,  please
      specify the fixative and fixation protocol.

      '
    title: Fixation
    examples:
    - value: 4% PFA for 30 min at room temperature
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: fixation
    owner: StainingPanel
    domain_of:
    - StainingPanel
    range: string
  instrument_information:
    name: instrument_information
    description: The information of the instrument used in a cytometry experiment.
    title: Instrument Information
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: instrument_information
    owner: StainingPanel
    domain_of:
    - StainingPanel
    range: InstrumentInformation
    recommended: true
  data_processing:
    name: data_processing
    description: The data processing steps used in a cytometry experiment.
    title: Cytometry data processing
    from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
    rank: 1000
    alias: data_processing
    owner: StainingPanel
    domain_of:
    - StainingPanel
    range: CytometryDataProcessing
    recommended: true