Slot: Physical linkage of different rearrangements (physical_linkage)

In case an experimental setup is used that physically links nucleic acids derived from distinct Rearrangements before library preparation, this field describes the mode of that linkage.

__

URI: nfdi4immuno:physical_linkage Alias: physical_linkage

Applicable Classes

Name	Description	Modifies Slot
NucleicAcidProcessing	A record of the procedures used to prepare nucleic acid libraries for sequenc...	no

Properties

• Range: PhysicalLinkage

• Required: True

• Regex pattern: ^.+$

Examples

Value
hetero_head-head
no_physical_linkage

Identifier and Mapping Information

Schema Source

• from schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema

Mappings

Mapping Type	Mapped Value
self	nfdi4immuno:physical_linkage
native	nfdi4immuno:physical_linkage

LinkML Source

name: physical_linkage
description: 'In case an experimental setup is used that physically links nucleic
  acids derived from distinct Rearrangements before library preparation, this field
  describes the mode of that linkage.

  '
title: Physical linkage of different rearrangements
examples:
- value: hetero_head-head
  description: The 5' ends of transcripts are linked in a single-cell context.
- value: no_physical_linkage
  description: No physical linkage between rearrangements.
from_schema: https://codebase.helmholtz.cloud/nfdi4immuno/portal-infra/metadata_schema
rank: 1000
alias: physical_linkage
domain_of:
- NucleicAcidProcessing
range: PhysicalLinkage
required: true
pattern: ^.+$